anatomical Template

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Inheritance graph

Defined in file : brainvisa/types/spm.py

Used in the following processes

Anatomy Normalization (using AimsMIRegister)
Anatomy Normalization (using Baladin)
Anatomy Normalization (using FSL)
Anatomy Normalization (using FSL) with Re-initialization
Anatomy Normalization (using SPM)
Anatomy Normalization (using SPM) with Re-initialization
Anatomy Normalization (using SPM12)
Anatomy Normalization (using SPM12) with Re-initialization
Anatomy Normalization (using SPM8)
Anatomy Normalization (using SPM8) with Re-initialization
Baladin Normalization Pipeline
FSL Normalization Pipeline
Simplified Morphologist 2015
Skull-stripped brain normalization
SPM Normalization Pipeline
spm12 - Results report
spm8 - Results report

Associated formats

Aperio svs
BMP image
BrainVISA volume formats
DICOM image
Directory
ECAT i image
ECAT v image
FDF image
FreesurferMGH
FreesurferMGZ
GIF image
GIS image
gz compressed MINC image
gz compressed NIFTI-1 image
Hamamatsu ndpi
Hamamatsu vms
Hamamatsu vmu
JPEG image
Leica scn
MINC image
NIFTI-1 image
PBM image
PGM image
PNG image
PPM image
Sakura svslide
SPM image
TIFF image
TIFF(.tif) image
Ventana bif
VIDA image
XBM image
XPM image
Zeiss czi

Associated ontology rules

  • fsl :
    • standard/MNI152_T1_1mm_brain
    standard/MNI152_T1_2mm_brain
    standard/MNI152_T1_1mm
    standard/MNI152_T1_2mm
  • shared :
    • anatomical_templates/MNI152_T1_1mm
    anatomical_templates/MNI152_T1_2mm
    anatomical_templates/MNI152_T1_1mm_brain
    anatomical_templates/MNI152_T1_2mm_brain
  • spm :
    • toolbox/OldNorm/T1
    templates/T1

    Key attributes

  • fsl :
    • Size ,  referential ,  skull_stripped
  • shared :
    • Size ,  referential ,  skull_stripped